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jbpm database tables corrupt

Question asked by tifrs on Feb 13, 2010
Hi All,
I am trying to run Alfresco on Mac OS X. First, I built from source, deployed to Tomcat 6.0.24 and started the server.
Afterwards I was able to see the newly created database tables in MySQL Query Browser, but all tables related to jbpm are corrupt and their columns cannot be fetched. In alfresco.log I found the following stack trace:

23:32:51,933 INFO  [org.alfresco.repo.domain.schema.SchemaBootstrap] Schema managed by database dialect org.hibernate.dialect.MySQLInnoDBDialect.
23:32:52,065 INFO  [org.alfresco.repo.domain.schema.SchemaBootstrap] Executing database script /Users/Julian/Documents/Development/Java/apache-tomcat-6.0.24/temp/Alfresco/AlfrescoSchema-MySQLInnoDBDialect-Update-6215311628022043432.sql (Copied from classpath:alfresco/dbscripts/create/3.3/org.hibernate.dialect.MySQLInnoDBDialect/AlfrescoCreate-3.3-RepoTables.sql).
23:32:52,486 INFO  [org.alfresco.repo.domain.schema.SchemaBootstrap] Executing database script /Users/Julian/Documents/Development/Java/apache-tomcat-6.0.24/temp/Alfresco/AlfrescoSchema-MySQLInnoDBDialect-Update-3202826148168075891.sql (Generated).
23:33:00,902 ERROR [org.alfresco.repo.domain.schema.SchemaBootstrap] Statement execution failed:
   SQL:     alter table JBPM_BYTEBLOCK
        add index FK_BYTEBLOCK_FILE (PROCESSFILE_),
        add constraint FK_BYTEBLOCK_FILE
        foreign key (PROCESSFILE_)
        references JBPM_BYTEARRAY (ID_)
   Error: Incorrect key file for table 'jbpm_byteblock'; try to repair it
   File: /Users/Julian/Documents/Development/Java/apache-tomcat-6.0.24/temp/Alfresco/AlfrescoSchema-MySQLInnoDBDialect-Update-3202826148168075891.sql
   Line: 781
23:33:00,904 ERROR [org.alfresco.repo.domain.schema.SchemaBootstrap] Schema auto-update failed
java.sql.SQLException: Incorrect key file for table 'jbpm_byteblock'; try to repair it
   at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1055)
   at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:956)
   at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3515)
   at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3447)
   at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:1951)
   at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2101)
   at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2548)
   at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2477)
   at com.mysql.jdbc.StatementImpl.execute(StatementImpl.java:741)
   at com.mysql.jdbc.StatementImpl.execute(StatementImpl.java:587)
   at org.apache.commons.dbcp.DelegatingStatement.execute(DelegatingStatement.java:264)
   at org.apache.commons.dbcp.DelegatingStatement.execute(DelegatingStatement.java:264)
   at org.alfresco.repo.domain.schema.SchemaBootstrap.executeStatement(SchemaBootstrap.java:1114)
   at org.alfresco.repo.domain.schema.SchemaBootstrap.executeScriptFile(SchemaBootstrap.java:1068)
   at org.alfresco.repo.domain.schema.SchemaBootstrap.updateSchema(SchemaBootstrap.java:724)
   at org.alfresco.repo.domain.schema.SchemaBootstrap.onBootstrap(SchemaBootstrap.java:1280)
   at org.springframework.extensions.surf.util.AbstractLifecycleBean.onApplicationEvent(AbstractLifecycleBean.java:56)
   at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:97)
   at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:294)
   at org.springframework.context.support.AbstractApplicationContext.finishRefresh(AbstractApplicationContext.java:858)
   at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:419)
   at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:261)
   at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:192)
   at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:47)
   at org.alfresco.web.app.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:69)
   at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3972)
   at org.apache.catalina.core.StandardContext.start(StandardContext.java:4467)
   at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:791)
   at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:771)
   at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:526)
   at org.apache.catalina.startup.HostConfig.deployDescriptor(HostConfig.java:637)
   at org.apache.catalina.startup.HostConfig.deployDescriptors(HostConfig.java:563)
   at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:498)
   at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1277)
   at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:321)
   at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:119)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1053)
   at org.apache.catalina.core.StandardHost.start(StandardHost.java:722)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1045)
   at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:443)
   at org.apache.catalina.core.StandardService.start(StandardService.java:516)
   at org.apache.catalina.core.StandardServer.start(StandardServer.java:710)
   at org.apache.catalina.startup.Catalina.start(Catalina.java:593)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:289)
   at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:414)
23:33:00,911 ERROR [org.springframework.web.context.ContextLoader] Context initialization failed
org.alfresco.error.AlfrescoRuntimeException: 01130000 Schema auto-update failed
   at org.alfresco.repo.domain.schema.SchemaBootstrap.onBootstrap(SchemaBootstrap.java:1408)
   at org.springframework.extensions.surf.util.AbstractLifecycleBean.onApplicationEvent(AbstractLifecycleBean.java:56)
   at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:97)
   at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:294)
   at org.springframework.context.support.AbstractApplicationContext.finishRefresh(AbstractApplicationContext.java:858)
   at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:419)
   at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:261)
   at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:192)
   at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:47)
   at org.alfresco.web.app.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:69)
   at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3972)
   at org.apache.catalina.core.StandardContext.start(StandardContext.java:4467)
   at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:791)
   at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:771)
   at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:526)
   at org.apache.catalina.startup.HostConfig.deployDescriptor(HostConfig.java:637)
   at org.apache.catalina.startup.HostConfig.deployDescriptors(HostConfig.java:563)
   at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:498)
   at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1277)
   at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:321)
   at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:119)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1053)
   at org.apache.catalina.core.StandardHost.start(StandardHost.java:722)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1045)
   at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:443)
   at org.apache.catalina.core.StandardService.start(StandardService.java:516)
   at org.apache.catalina.core.StandardServer.start(StandardServer.java:710)
   at org.apache.catalina.startup.Catalina.start(Catalina.java:593)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:289)
   at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:414)
Caused by: java.sql.SQLException: Incorrect key file for table 'jbpm_byteblock'; try to repair it
   at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:1055)
   at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:956)
   at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3515)
   at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:3447)
   at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:1951)
   at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:2101)
   at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2548)
   at com.mysql.jdbc.ConnectionImpl.execSQL(ConnectionImpl.java:2477)
   at com.mysql.jdbc.StatementImpl.execute(StatementImpl.java:741)
   at com.mysql.jdbc.StatementImpl.execute(StatementImpl.java:587)
   at org.apache.commons.dbcp.DelegatingStatement.execute(DelegatingStatement.java:264)
   at org.apache.commons.dbcp.DelegatingStatement.execute(DelegatingStatement.java:264)
   at org.alfresco.repo.domain.schema.SchemaBootstrap.executeStatement(SchemaBootstrap.java:1114)
   at org.alfresco.repo.domain.schema.SchemaBootstrap.executeScriptFile(SchemaBootstrap.java:1068)
   at org.alfresco.repo.domain.schema.SchemaBootstrap.updateSchema(SchemaBootstrap.java:724)
   at org.alfresco.repo.domain.schema.SchemaBootstrap.onBootstrap(SchemaBootstrap.java:1280)
   … 33 more

I am using MySQL 5.0.1. The issue seems to be related to jbpm but I cannot find anything about it on Google. The only hint I could find was to "REPAIR TABLE JBPM_BYTEBLOCK" but MySQL tells me "Incorrect key file for table 'jbpm_bypeblock'; Corrupt", so this doesn't seem work.
Can anybody please help me with this?

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