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Alfresco failed to start , Mysql5.5 reinstalled

Question asked by christopher on Apr 17, 2015
Latest reply on Apr 18, 2015 by g_rathod
I’m running into a blocker issue, Can someone reply to this earliest?

I have a ubuntu system where alfresco enterprise edition3.4.5 was already installed.

I reinstalled Mysql5.5 as it was corrupt,din’t take any back up of db.

Below are the steps followed.

Stopped Mysql
Stopped alfresco
Deleted all Mysql related installables ( no back up is taken)
Installed Mysql5.5
Started Mysql
Created alfresco user with necessary permissions
Removed contentstore, contentstore.deleted and lucene indexes.
Started alfresco but it throws below error.
S/W details:
———
x86_64 GNU/Linux Ubuntu
Alfresco - 3.4.5
Mysql - 5.5

Is there any initialize script for populating DB and keep in sync with alfresco as DB is a fresh db?
(OR) What am I missing something else
Error log:

Apr 17, 2015 1:36:18 PM org.apache.catalina.core.AprLifecycleListener init
INFO: The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: /opt/alfresco-3.4.5/java/jre/lib/amd64/server:/opt/alfresco-3.4.5/java/jre/lib/amd64:/opt/alfresco-3.4.5/java/jre/../lib/amd64:/opt/alfresco-3.4.5/common/lib::/usr/java/packages/lib/amd64:/usr/lib64:/lib64:/lib:/usr/lib
Apr 17, 2015 1:36:19 PM org.apache.coyote.http11.Http11Protocol init
INFO: Initializing Coyote HTTP/1.1 on http-8180
Apr 17, 2015 1:36:19 PM org.apache.catalina.startup.Catalina load
INFO: Initialization processed in 387 ms
Apr 17, 2015 1:36:19 PM org.apache.catalina.core.StandardService start
INFO: Starting service Catalina
Apr 17, 2015 1:36:19 PM org.apache.catalina.core.StandardEngine start
INFO: Starting Servlet Engine: Apache Tomcat/6.0.29
Apr 17, 2015 1:36:19 PM org.apache.catalina.startup.HostConfig deployDescriptor
INFO: Deploying configuration descriptor ROOT.xml
Apr 17, 2015 1:36:19 PM org.apache.catalina.core.StandardContext addApplicationListener
INFO: The listener "org.apache.myfaces.webapp.StartupServletContextListener" is already configured for this context. The duplicate definition has been ignored.
13:36:24,311  INFO  [alfresco.config.JndiPropertiesFactoryBean] Loading properties file from class path resource [alfresco/repository.properties]
13:36:24,313  INFO  [alfresco.config.JndiPropertiesFactoryBean] Loading properties file from class path resource [alfresco/domain/transaction.properties]
13:36:24,313  INFO  [alfresco.config.JndiPropertiesFactoryBean] Loading properties file from file [/opt/alfresco-3.4.5/tomcat/webapps/ROOT/WEB-INF/classes/alfresco/module/test/alfresco-global.properties]
13:36:24,313  INFO  [alfresco.config.JndiPropertiesFactoryBean] Loading properties file from URL [file:/opt/alfresco-3.4.5/tomcat/shared/classes/alfresco-global.properties]
13:36:24,354  INFO  [alfresco.config.FixedPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/version.properties]
13:36:24,397  INFO  [alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
13:36:24,420  INFO  [alfresco.config.FixedPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/domain/cache-strategies.properties]
13:36:24,938  INFO  [management.subsystems.ChildApplicationContextFactory] Starting 'sysAdmin' subsystem, ID: [sysAdmin, default]
13:36:24,966  INFO  [alfresco.config.FixedPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/version.properties]
13:36:24,966  INFO  [alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
13:36:24,967  INFO  [alfresco.config.FixedPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/domain/cache-strategies.properties]
13:36:24,973  INFO  [management.subsystems.ChildApplicationContextFactory] Startup of 'sysAdmin' subsystem, ID: [sysAdmin, default] complete
13:36:34,161  INFO  [extensions.webscripts.TemplateProcessorRegistry] Registered template processor Repository Template Processor for extension ftl
13:36:34,162  INFO  [extensions.webscripts.ScriptProcessorRegistry] Registered script processor Repository Script Processor for extension js
java.net.UnknownHostException: basename
at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:177)
at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
at java.net.Socket.connect(Socket.java:529)
at java.net.Socket.connect(Socket.java:478)
at sun.net.NetworkClient.doConnect(NetworkClient.java:163)
at sun.net.NetworkClient.openServer(NetworkClient.java:118)
at sun.net.ftp.FtpClient.openServer(FtpClient.java:488)
at sun.net.ftp.FtpClient.openServer(FtpClient.java:475)
at sun.net.www.protocol.ftp.FtpURLConnection.connect(FtpURLConnection.java:270)
at sun.net.www.protocol.ftp.FtpURLConnection.getInputStream(FtpURLConnection.java:352)
at java.net.URL.openStream(URL.java:1010)
at org.apache.xml.resolver.Catalog.parseCatalogFile(Unknown Source)
at org.apache.xml.resolver.Catalog.parsePendingCatalogs(Unknown Source)
at org.apache.xml.resolver.Catalog.parseCatalog(Unknown Source)
at org.apache.xml.resolver.Catalog.loadSystemCatalogs(Unknown Source)
at org.apache.xml.resolver.CatalogManager.getPrivateCatalog(Unknown Source)
at org.apache.xml.resolver.CatalogManager.getCatalog(Unknown Source)
at org.apache.xml.resolver.tools.CatalogResolver.initializeCatalogs(Unknown Source)
at org.apache.xml.resolver.tools.CatalogResolver.<init>(Unknown Source)
at org.apache.cxf.catalog.OASISCatalogManager.getResolver(OASISCatalogManager.java:69)
at org.apache.cxf.catalog.OASISCatalogManager.<init>(OASISCatalogManager.java:58)
at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:126)
at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:72)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:938)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:890)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:479)
at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:450)
at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:290)
at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222)
at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:287)
at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:189)
at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:557)
at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:842)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:416)
at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:261)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:192)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:47)
at org.alfresco.web.app.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:63)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4135)
at org.apache.catalina.core.StandardContext.start(StandardContext.java:4630)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:791)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:771)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:546)
at org.apache.catalina.startup.HostConfig.deployDescriptor(HostConfig.java:637)
at org.apache.catalina.startup.HostConfig.deployDescriptors(HostConfig.java:563)
at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:498)
at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1277)
at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:321)
at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:119)
at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1053)
at org.apache.catalina.core.StandardHost.start(StandardHost.java:785)
at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1045)
at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:445)
at org.apache.catalina.core.StandardService.start(StandardService.java:519)
at org.apache.catalina.core.StandardServer.start(StandardServer.java:710)
at org.apache.catalina.startup.Catalina.start(Catalina.java:581)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:289)
at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:414)
13:36:39,261  INFO  [domain.schema.SchemaBootstrap] Schema managed by database dialect org.hibernate.dialect.MySQLInnoDBDialect.
13:36:39,440  INFO  [domain.schema.SchemaBootstrap] No changes were made to the schema.
13:36:40,448  INFO  [management.subsystems.ChildApplicationContextFactory] Starting 'thirdparty' subsystem, ID: [thirdparty, default]
13:36:40,459  INFO  [alfresco.config.FixedPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/version.properties]
13:36:40,459  INFO  [alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
13:36:40,460  INFO  [alfresco.config.FixedPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/domain/cache-strategies.properties]
13:36:40,589  INFO  [management.subsystems.ChildApplicationContextFactory] Startup of 'thirdparty' subsystem, ID: [thirdparty, default] complete
13:36:40,589  INFO  [management.subsystems.ChildApplicationContextFactory] Starting 'OOoDirect' subsystem, ID: [OOoDirect, default]
13:36:40,599  INFO  [alfresco.config.FixedPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/version.properties]
13:36:40,599  INFO  [alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
13:36:40,599  INFO  [alfresco.config.FixedPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/domain/cache-strategies.properties]
13:36:41,037  WARN  [alfresco.util.OpenOfficeConnectionTester] An initial OpenOffice connection could not be established.
13:36:41,043  INFO  [management.subsystems.ChildApplicationContextFactory] Startup of 'OOoDirect' subsystem, ID: [OOoDirect, default] complete
13:36:41,048  INFO  [management.subsystems.ChildApplicationContextFactory] Starting 'OOoJodconverter' subsystem, ID: [OOoJodconverter, default]
13:36:41,095  INFO  [alfresco.config.FixedPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/version.properties]
13:36:41,096  INFO  [alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
13:36:41,096  INFO  [alfresco.config.FixedPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/domain/cache-strategies.properties]
13:36:41,136  INFO  [management.subsystems.ChildApplicationContextFactory] Startup of 'OOoJodconverter' subsystem, ID: [OOoJodconverter, default] complete
13:36:41,292  WARN  [node.index.FullIndexRecoveryComponent] The indexes are not synchronized with the database.
13:36:41,341  WARN  [node.index.AVMFullIndexRecoveryComponent]     Index for avm store sitestore is out of date
13:36:41,506  WARN  [service.descriptor.DescriptorService] Alfresco license: Failed to verify license - Invalid License!
13:36:41,506  WARN  [service.descriptor.DescriptorService] Alfresco license: Restricted Alfresco Repository to read-only capability
13:36:41,535  INFO  [repo.admin.ConfigurationChecker] The Alfresco root data directory ('dir.root') is: /opt/alfresco-3.4.5/alf_data
13:36:41,606  ERROR [repo.admin.ConfigurationChecker] CONTENT INTEGRITY ERROR: Indexes not found for 7 stores.
13:36:41,606  INFO  [repo.admin.ConfigurationChecker] You may set 'index.recovery.mode=FULL' if you need to rebuild the indexes.
13:36:41,606  ERROR [repo.admin.ConfigurationChecker] CONTENT INTEGRITY ERROR: System content not found in content store.
13:36:41,607  ERROR [repo.admin.ConfigurationChecker] Ensure that the 'dir.root' property is pointing to the correct data location.
13:36:41,609  ERROR [web.context.ContextLoader] Context initialization failed
org.alfresco.error.AlfrescoRuntimeException: 03170000 Ensure that the 'dir.root' property is pointing to the correct data location.
at org.alfresco.repo.admin.ConfigurationChecker.check(ConfigurationChecker.java:332)
at org.alfresco.repo.admin.ConfigurationChecker.access$000(ConfigurationChecker.java:68)
at org.alfresco.repo.admin.ConfigurationChecker$1.execute(ConfigurationChecker.java:180)
at org.alfresco.repo.transaction.RetryingTransactionHelper.doInTransaction(RetryingTransactionHelper.java:381)
at org.alfresco.repo.transaction.RetryingTransactionHelper.doInTransaction(RetryingTransactionHelper.java:272)
at org.alfresco.repo.admin.ConfigurationChecker.onBootstrap(ConfigurationChecker.java:184)
at org.springframework.extensions.surf.util.AbstractLifecycleBean.onApplicationEvent(AbstractLifecycleBean.java:56)
at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:97)
at org.alfresco.repo.management.SafeApplicationEventMulticaster.multicastEvent(SafeApplicationEventMulticaster.java:78)
at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:294)
at org.springframework.context.support.AbstractApplicationContext.finishRefresh(AbstractApplicationContext.java:858)
at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:419)
at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:261)
at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:192)
at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:47)
at org.alfresco.web.app.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:63)
at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4135)
at org.apache.catalina.core.StandardContext.start(StandardContext.java:4630)
at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:791)
at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:771)
at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:546)
at org.apache.catalina.startup.HostConfig.deployDescriptor(HostConfig.java:637)
at org.apache.catalina.startup.HostConfig.deployDescriptors(HostConfig.java:563)
at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:498)
at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1277)
at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:321)
at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:119)
at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1053)
at org.apache.catalina.core.StandardHost.start(StandardHost.java:785)
at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1045)
at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:445)
at org.apache.catalina.core.StandardService.start(StandardService.java:519)
at org.apache.catalina.core.StandardServer.start(StandardServer.java:710)
at org.apache.catalina.startup.Catalina.start(Catalina.java:581)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:289)
at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:414)
Apr 17, 2015 1:36:41 PM org.apache.catalina.core.StandardContext start
SEVERE: Error listenerStart
Apr 17, 2015 1:36:41 PM org.apache.catalina.core.StandardContext start
SEVERE: Context [] startup failed due to previous errors
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [DefaultScheduler_Worker-1] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [DefaultScheduler_Worker-2] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [DefaultScheduler_Worker-3] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [DefaultScheduler_Worker-4] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [DefaultScheduler_Worker-5] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [DefaultScheduler_Worker-6] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [DefaultScheduler_Worker-7] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [DefaultScheduler_Worker-8] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [DefaultScheduler_Worker-9] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [DefaultScheduler_Worker-10] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [Thread-12] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [Timer-0] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [indexThread1] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [indexThread2] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [indexThread3] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [indexThread4] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [indexThread5] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [indexThread6] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [indexThread7] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [indexThread8] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [indexThread9] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [indexThread10] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [DefaultScheduler_QuartzSchedulerThread] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [Timer runner-1,<CL-NAME>,BEST02VMW02-3089] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads
SEVERE: The web application [] appears to have started a thread named [TransferQueueBundler,null,null] but has failed to stop it. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [null] (value [com.sun.xml.bind.v2.ClassFactory$1@758d8478]) and a value of type [java.util.WeakHashMap] (value [{class org.alfresco.repo.audit.model._3.PathMap=java.lang.ref.WeakReference@7a2fc0ff, class javax.xml.bind.annotation.W3CDomHandler=java.lang.ref.WeakReference@5527e404, class org.alfresco.repo.audit.model._3.DataGenerator=java.lang.ref.WeakReference@2deaee49, class java.util.ArrayList=java.lang.ref.WeakReference@1ac2122c, class org.alfresco.repo.audit.model._3.DataExtractors=java.lang.ref.WeakReference@3b37146d, class org.alfresco.repo.audit.model._3.Audit=java.lang.ref.WeakReference@1d1e1e7a, class org.alfresco.repo.audit.model._3.GenerateValue=java.lang.ref.WeakReference@2462ea85, class org.alfresco.repo.audit.model._3.DataGenerators=java.lang.ref.WeakReference@5a12d46c, class org.alfresco.repo.audit.model._3.AuditPath=java.lang.ref.WeakReference@a382ca7, class org.alfresco.repo.audit.model._3.DataExtractor=java.lang.ref.WeakReference@6dfb8d2e, class org.alfresco.repo.audit.model._3.PathMappings=java.lang.ref.WeakReference@1df1ff6b, class org.alfresco.repo.audit.model._3.RecordValue=java.lang.ref.WeakReference@7ab7d928, class org.alfresco.repo.audit.model._3.Application=java.lang.ref.WeakReference@3c121009}]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@45daddae]) and a value of type [com.ibatis.sqlmap.engine.mapping.result.ResultObjectFactoryUtil.FactorySettings] (value [com.ibatis.sqlmap.engine.mapping.result.ResultObjectFactoryUtil$FactorySettings@11e86299]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [null] (value [org.alfresco.repo.tagging.TagScopePropertyMethodInterceptor$1@2fa133fe]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [org.alfresco.repo.security.authentication.AuthenticationUtil.ThreadLocalStack] (value [org.alfresco.repo.security.authentication.AuthenticationUtil$ThreadLocalStack@5c8120]) and a value of type [java.util.Stack] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@39215c0f]) and a value of type [org.alfresco.repo.search.impl.lucene.index.ReferenceCountingReadOnlyIndexReaderFactory.ReferenceCountingReadOnlyIndexReader] (value [org.alfresco.repo.search.impl.lucene.index.ReferenceCountingReadOnlyIndexReaderFactory$ReferenceCountingReadOnlyIndexReader@150e6233]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [null] (value [com.sun.xml.bind.v2.runtime.Coordinator$1@63510d11]) and a value of type [com.sun.xml.bind.v2.runtime.Coordinator[]] (value [[Lcom.sun.xml.bind.v2.runtime.Coordinator;@5e310a07]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [org.alfresco.repo.policy.BaseBehaviour.StackThreadLocal] (value [org.alfresco.repo.policy.BaseBehaviour$StackThreadLocal@658981e0]) and a value of type [java.util.Stack] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@26adcd34]) and a value of type [org.apache.cxf.bus.CXFBusImpl] (value [org.apache.cxf.bus.CXFBusImpl@5c7b24c2]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [org.alfresco.repo.security.authentication.AuthenticationUtil.ThreadLocalStack] (value [org.alfresco.repo.security.authentication.AuthenticationUtil$ThreadLocalStack@18aa6bfd]) and a value of type [java.util.Stack] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap
SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@5c97bbb1]) and a value of type [org.alfresco.util.CachingDateFormat] (value [yyyy-MM-dd]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak.
log4j:ERROR LogMananger.repositorySelector was null likely due to error in class reloading, using NOPLoggerRepository.
Apr 17, 2015 1:36:42 PM org.apache.catalina.startup.HostConfig deployDescriptor
INFO: Deploying configuration descriptor host-manager.xml
Apr 17, 2015 1:36:42 PM org.apache.catalina.startup.HostConfig deployDescriptor
INFO: Deploying configuration descriptor manager.xml
Apr 17, 2015 1:36:42 PM org.apache.coyote.http11.Http11Protocol start
INFO: Starting Coyote HTTP/1.1 on http-8180
Apr 17, 2015 1:36:42 PM org.apache.jk.common.ChannelSocket init
INFO: JK: ajp13 listening on /0.0.0.0:8109
Apr 17, 2015 1:36:42 PM org.apache.jk.server.JkMain start
INFO: Jk running ID=0 time=0/14  config=null
Apr 17, 2015 1:36:42 PM org.apache.catalina.startup.Catalina start
INFO: Server startup in 23674 ms
Exception in thread "Timer-0" java.lang.NullPointerException
at org.alfresco.util.DynamicallySizedThreadPoolExecutor.execute(DynamicallySizedThreadPoolExecutor.java:88)
at org.alfresco.repo.search.impl.lucene.index.IndexInfo$AbstractSchedulable.schedule(IndexInfo.java:3233)
at org.alfresco.repo.search.impl.lucene.index.IndexInfo$4.run(IndexInfo.java:797)
at java.util.TimerThread.mainLoop(Timer.java:512)
at java.util.TimerThread.run(Timer.java:462)
Apr 17, 2015 1:38:39 PM org.apache.catalina.loader.WebappClassLoader loadClass
INFO: Illegal access: this web application instance has been stopped already.  Could not load org.jgroups.util.TimeScheduler2$1.  The eventual following stack trace is caused by an error thrown for debugging purposes as well as to attempt to terminate the thread which caused the illegal access, and has no functional impact.
java.lang.IllegalStateException
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1531)
at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1491)
at org.jgroups.util.TimeScheduler2._run(TimeScheduler2.java:294)
at org.jgroups.util.TimeScheduler2.run(TimeScheduler2.java:278)
at java.lang.Thread.run(Thread.java:662)
Exception in thread "Timer runner-1,<CL-NAME>,BEST02VMW02-3089" java.lang.NullPointerException
at org.jgroups.logging.Log4JLogImpl.error(Log4JLogImpl.java:64)
at org.jgroups.util.TimeScheduler2.run(TimeScheduler2.java:281)
at java.lang.Thread.run(Thread.java:662)

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